pyrokinetics.pyroscan.PyroScan#
- class pyrokinetics.pyroscan.PyroScan(pyro, parameter_dict=None, p_prime_type=0, value_fmt='.2f', value_separator='_', parameter_separator='/', file_name=None, base_directory='.', load_default_parameter_keys=True, pyroscan_json=None)[source]#
Bases:
object
Creates a dictionary of pyro objects in pyro_dict
Need a templates pyro object
Dict of parameters to scan through { param : [values], }
- __init__(pyro, parameter_dict=None, p_prime_type=0, value_fmt='.2f', value_separator='_', parameter_separator='/', file_name=None, base_directory='.', load_default_parameter_keys=True, pyroscan_json=None)[source]#
Methods
__init__
(pyro[, parameter_dict, ...])add_parameter_func
([parameter_key, ...])Applies function
parameter_func(pyro, **kwargs)
on pyro object each time after parameter_key is set in a scanadd_parameter_key
([parameter_key, ...])parameter_key: string to access variable parameter_attr: string of attribute storing value in pyro parameter_location: lis of strings showing path to value in pyro
convert_gk_code
(gk_code)Converts all gyrokinetics codes to the code type 'gk_code'.
create_single_run
(parameters)Create a new Pyro instance from the PyroScan base with new run parameters
format_single_run_name
(parameters)Concatenate parameter names/values with separator
Loads default parameters name into parameter_map
Loads GKOutput as a xarray Sataset
Creates generator of outer product for all parameter permutations
write
([file_name, base_directory, template_file])Creates and writes GK input files for parameters in scan
Attributes
- JSON_ATTRS = ['value_fmt', 'value_separator', 'parameter_separator', 'parameter_dict', 'file_name', 'base_directory', 'p_prime_type', 'parameter_map']#
- add_parameter_func(parameter_key=None, parameter_func=None, parameter_kwargs=None)[source]#
Applies function
parameter_func(pyro, **kwargs)
on pyro object each time after parameter_key is set in a scanparameter_key: string to access variable parameter_func: function that take in a pyro object applies modification parameter_kwargs: Dictionary of kwargs to apply to function
- add_parameter_key(parameter_key=None, parameter_attr=None, parameter_location=None)[source]#
parameter_key: string to access variable parameter_attr: string of attribute storing value in pyro parameter_location: lis of strings showing path to value in pyro
- property base_directory#
- convert_gk_code(gk_code)[source]#
Converts all gyrokinetics codes to the code type ‘gk_code’. This can be any viable GKInput type (GS2, CGYRO, GENE,…)
- create_single_run(parameters)[source]#
Create a new Pyro instance from the PyroScan base with new run parameters
- Parameters:
parameters (dict)
- property file_name#
- property gk_code#
- load_default_parameter_keys()[source]#
Loads default parameters name into parameter_map
{param : [“attribute”, [“key_to_location_1”, “key_to_location_2” ]] }
for example
{‘electron_temp_gradient’: [“local_species”, [‘electron’,’inverse_lt’]] }